Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000242.1 Corchorus capsularis cultivar CVL-1 contig00242, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1754
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27


Found at i:647 original size:27 final size:27

Alignment explanation


    Indices: 600--708  Score: 128
    Period size: 28  Copynumber: 4.0  Consensus size: 27

        590 AACTTTAAAA

                     *  *         **    
        600 AAAAATGACTAAGATGCCCCCTAAGTGC
          1 AAAAATGACCAAAATG-CCCCTGGGTGC

                                       
        628 AAAAATGACCAAAATGCCCCTGGGTGC
          1 AAAAATGACCAAAATGCCCCTGGGTGC

              *                        
        655 AAGAATGACCAAAATGCCCCTGGGTGC
          1 AAAAATGACCAAAATGCCCCTGGGTGC

                       *    *   *      
        682 AAAAAATGACCGAAATACCCTTGGGTG
          1 -AAAAATGACCAAAATGCCCCTGGGTG

        709 ACCCTAATGC


Statistics
Matches: 71,  Mismatches: 9, Indels: 2
        0.87            0.11        0.02

Matches are distributed among these distances:
  27   35  0.49
  28   36  0.51

ACGTcount: A:0.38, C:0.24, G:0.22, T:0.17


Consensus pattern (27 bp):   
AAAAATGACCAAAATGCCCCTGGGTGC
Done.