Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002420.1 Corchorus capsularis cultivar CVL-1 contig02426, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 705

Length: 1176
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31


Found at i:70 original size:20 final size:20

Alignment explanation


    Indices: 45--85  Score: 82
    Period size: 20  Copynumber: 2.0  Consensus size: 20

         35 TTTAATTCAA

                                
         45 ACCAAACATTCTTTTAACTT
          1 ACCAAACATTCTTTTAACTT

                                
         65 ACCAAACATTCTTTTAACTT
          1 ACCAAACATTCTTTTAACTT

             
         85 A
          1 A

         86 AACCAAAACA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.37, C:0.24, G:0.00, T:0.39


Consensus pattern (20 bp):   
ACCAAACATTCTTTTAACTT
Done.