Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002428.1 Corchorus capsularis cultivar CVL-1 contig02434, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 717

Length: 1196
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.32


Found at i:1011 original size:19 final size:20

Alignment explanation


    Indices: 987--1026  Score: 73
    Period size: 19  Copynumber: 2.0  Consensus size: 20

        977 AGTTTAATTT

                                
        987 TATATTCGAA-TTACTTTTA
          1 TATATTCGAATTTACTTTTA

                                
       1006 TATATTCGAATTTACTTTTA
          1 TATATTCGAATTTACTTTTA

             
       1026 T
          1 T

       1027 CGCATTCCCA


Statistics
Matches: 20,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  19   10  0.50
  20   10  0.50

ACGTcount: A:0.30, C:0.10, G:0.05, T:0.55


Consensus pattern (20 bp):   
TATATTCGAATTTACTTTTA

Done.