Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002455.1 Corchorus capsularis cultivar CVL-1 contig02461, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 616

Length: 1028
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35


Found at i:226 original size:18 final size:19

Alignment explanation


    Indices: 193--229  Score: 58
    Period size: 18  Copynumber: 2.0  Consensus size: 19

        183 ATAAATTGAA

                               
        193 TATTATAAAAATAACAAAT
          1 TATTATAAAAATAACAAAT

                     *         
        212 TATTAT-AACATAACAAAT
          1 TATTATAAAAATAACAAAT

        230 GGGCGATGGG


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18   11  0.65
  19    6  0.35

ACGTcount: A:0.59, C:0.08, G:0.00, T:0.32


Consensus pattern (19 bp):   
TATTATAAAAATAACAAAT

Found at i:721 original size:27 final size:27

Alignment explanation


    Indices: 690--743  Score: 108
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        680 TTTGTATTTA

                                       
        690 AATTATTGGTAACTTTCTTTTTTATAT
          1 AATTATTGGTAACTTTCTTTTTTATAT

                                       
        717 AATTATTGGTAACTTTCTTTTTTATAT
          1 AATTATTGGTAACTTTCTTTTTTATAT

        744 CTCGATTCAA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   27  1.00

ACGTcount: A:0.26, C:0.07, G:0.07, T:0.59


Consensus pattern (27 bp):   
AATTATTGGTAACTTTCTTTTTTATAT
Done.