Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002458.1 Corchorus capsularis cultivar CVL-1 contig02464, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 604

Length: 1008
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.37


Found at i:221 original size:20 final size:20

Alignment explanation


    Indices: 196--236  Score: 73
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        186 TGTTTTGGTT

                                
        196 TAAGTTAAAAGAATGCTTGG
          1 TAAGTTAAAAGAATGCTTGG

                           *    
        216 TAAGTTAAAAGAATGTTTGG
          1 TAAGTTAAAAGAATGCTTGG

             
        236 T
          1 T

        237 TTGAATTAAA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.39, C:0.02, G:0.24, T:0.34


Consensus pattern (20 bp):   
TAAGTTAAAAGAATGCTTGG
Done.