Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002471.1 Corchorus capsularis cultivar CVL-1 contig02477, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 651

Length: 1086
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31


Found at i:247 original size:24 final size:21

Alignment explanation


    Indices: 144--234  Score: 128
    Period size: 21  Copynumber: 4.3  Consensus size: 21

        134 ACTCACAAAG

                        * *  *    
        144 AAAAGAGGAAGTGATTTAGACA
          1 AAAAGA-GAAGTAACTTGGACA

                      *          
        166 AAAAGAGAAGCAACTTGGACA
          1 AAAAGAGAAGTAACTTGGACA

                      *          
        187 AAAAGAGAAGCAACTTGGACA
          1 AAAAGAGAAGTAACTTGGACA

                                 
        208 AAAAGAGAAGTAACTTGGACA
          1 AAAAGAGAAGTAACTTGGACA

                  
        229 AAAAGA
          1 AAAAGA

        235 AACGAAGTGA


Statistics
Matches: 64,  Mismatches: 5, Indels: 1
        0.91            0.07        0.01

Matches are distributed among these distances:
  21   58  0.91
  22    6  0.09

ACGTcount: A:0.54, C:0.10, G:0.24, T:0.12


Consensus pattern (21 bp):   
AAAAGAGAAGTAACTTGGACA
Done.