Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002476.1 Corchorus capsularis cultivar CVL-1 contig02482, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 618

Length: 1030
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:726 original size:19 final size:19

Alignment explanation


    Indices: 702--742  Score: 82
    Period size: 19  Copynumber: 2.2  Consensus size: 19

        692 TATAACAAAC

                               
        702 AGATAGATACAAATGGAAA
          1 AGATAGATACAAATGGAAA

                               
        721 AGATAGATACAAATGGAAA
          1 AGATAGATACAAATGGAAA

               
        740 AGA
          1 AGA

        743 ATGGATAAAT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   22  1.00

ACGTcount: A:0.59, C:0.05, G:0.22, T:0.15


Consensus pattern (19 bp):   
AGATAGATACAAATGGAAA
Done.