Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002477.1 Corchorus capsularis cultivar CVL-1 contig02483, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 697

Length: 1163
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.24


Found at i:777 original size:32 final size:32

Alignment explanation


    Indices: 741--802  Score: 99
    Period size: 32  Copynumber: 1.9  Consensus size: 32

        731 CATCTATTTT

                                             
        741 CATTG-TTCAACTCTTTTGACAACACGAAAACC
          1 CATTGTTTCAACTC-TTTGACAACACGAAAACC

                                    *     
        773 CATTGTTTCAACTCTTTGACAACATGAAAA
          1 CATTGTTTCAACTCTTTGACAACACGAAAA

        803 AACCAAAAGC


Statistics
Matches: 28,  Mismatches: 1, Indels: 2
        0.90            0.03        0.06

Matches are distributed among these distances:
  32   20  0.71
  33    8  0.29

ACGTcount: A:0.35, C:0.24, G:0.10, T:0.31


Consensus pattern (32 bp):   
CATTGTTTCAACTCTTTGACAACACGAAAACC

Done.