Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000248.1 Corchorus capsularis cultivar CVL-1 contig00248, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 766

Length: 1277
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33


Found at i:291 original size:17 final size:16

Alignment explanation


    Indices: 265--296  Score: 55
    Period size: 17  Copynumber: 1.9  Consensus size: 16

        255 TTTGTTTTCT

                            
        265 TTTGGACTCTTGTCTA
          1 TTTGGACTCTTGTCTA

                            
        281 TTTGAGACTCTTGTCT
          1 TTTG-GACTCTTGTCT

        297 CCAAGACTCT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16    4  0.27
  17   11  0.73

ACGTcount: A:0.12, C:0.19, G:0.19, T:0.50


Consensus pattern (16 bp):   
TTTGGACTCTTGTCTA

Found at i:310 original size:32 final size:34

Alignment explanation


    Indices: 269--335  Score: 102
    Period size: 36  Copynumber: 2.0  Consensus size: 34

        259 TTTTCTTTTG

                                              
        269 GACTCTTGTCTA-TT-TGAGACTCTTGTCTCCAA
          1 GACTCTTGTCTACTTCTGAGACTCTTGTCTCCAA

                                               
        301 GACTCTTGTCTACTTACCTGAGACTCTTGTCTCCA
          1 GACTCTTGTCTACTT--CTGAGACTCTTGTCTCCA

        336 TCATTCCTCT


Statistics
Matches: 31,  Mismatches: 0, Indels: 4
        0.89            0.00        0.11

Matches are distributed among these distances:
  32   12  0.39
  33    2  0.06
  36   17  0.55

ACGTcount: A:0.18, C:0.28, G:0.15, T:0.39


Consensus pattern (34 bp):   
GACTCTTGTCTACTTCTGAGACTCTTGTCTCCAA

Done.