Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002487.1 Corchorus capsularis cultivar CVL-1 contig02494, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 669

Length: 1116
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.34


Found at i:1053 original size:18 final size:18

Alignment explanation


    Indices: 1030--1067  Score: 76
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       1020 GCCAAAAAAG

                              
       1030 ATTTATTTATTATTCATT
          1 ATTTATTTATTATTCATT

                              
       1048 ATTTATTTATTATTCATT
          1 ATTTATTTATTATTCATT

              
       1066 AT
          1 AT

       1068 ATGGTTGTTA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66


Consensus pattern (18 bp):   
ATTTATTTATTATTCATT
Done.