Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002494.1 Corchorus capsularis cultivar CVL-1 contig02501, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 672

Length: 1120
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.32


Found at i:711 original size:18 final size:18

Alignment explanation


    Indices: 688--725  Score: 76
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        678 GAAAGAATAA

                              
        688 GTCTTATTATTGATACAT
          1 GTCTTATTATTGATACAT

                              
        706 GTCTTATTATTGATACAT
          1 GTCTTATTATTGATACAT

              
        724 GT
          1 GT

        726 TAGTAACATT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.26, C:0.11, G:0.13, T:0.50


Consensus pattern (18 bp):   
GTCTTATTATTGATACAT

Found at i:813 original size:16 final size:16

Alignment explanation


    Indices: 792--823  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

        782 ACGGTTCTGG

                            
        792 ATTTTACTAGAAATCA
          1 ATTTTACTAGAAATCA

                            
        808 ATTTTACTAGAAATCA
          1 ATTTTACTAGAAATCA

        824 TATAAGAGCT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.44, C:0.12, G:0.06, T:0.38


Consensus pattern (16 bp):   
ATTTTACTAGAAATCA
Done.