Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002512.1 Corchorus capsularis cultivar CVL-1 contig02519, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 664

Length: 1107
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.29


Found at i:407 original size:16 final size:16

Alignment explanation


    Indices: 386--417  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

        376 AGCTCTTATA

                            
        386 TGATTTCTAGTAAAAT
          1 TGATTTCTAGTAAAAT

                            
        402 TGATTTCTAGTAAAAT
          1 TGATTTCTAGTAAAAT

        418 CCAGAACCGT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44


Consensus pattern (16 bp):   
TGATTTCTAGTAAAAT

Found at i:507 original size:18 final size:18

Alignment explanation


    Indices: 484--521  Score: 76
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        474 AATGTTACTA

                              
        484 ACATGTATCAATAATAAG
          1 ACATGTATCAATAATAAG

                              
        502 ACATGTATCAATAATAAG
          1 ACATGTATCAATAATAAG

              
        520 AC
          1 AC

        522 TTATTCTTTC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.50, C:0.13, G:0.11, T:0.26


Consensus pattern (18 bp):   
ACATGTATCAATAATAAG
Done.