Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002513.1 Corchorus capsularis cultivar CVL-1 contig02520, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 673

Length: 1122
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.26


Found at i:513 original size:27 final size:26

Alignment explanation


    Indices: 479--529  Score: 68
    Period size: 27  Copynumber: 1.9  Consensus size: 26

        469 ATCTCGTCGT

                                       
        479 TAATTTAATATTAATACA-ACAATAGC
          1 TAATTTAATATTAATA-ATACAATAGC

                      *              
        505 TAATATTAATTTTAATAATACAATA
          1 TAAT-TTAATATTAATAATACAATA

        530 AAAAAATCTA


Statistics
Matches: 22,  Mismatches: 1, Indels: 3
        0.85            0.04        0.12

Matches are distributed among these distances:
  26    5  0.23
  27   17  0.77

ACGTcount: A:0.51, C:0.08, G:0.02, T:0.39


Consensus pattern (26 bp):   
TAATTTAATATTAATAATACAATAGC
Done.