Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002524.1 Corchorus capsularis cultivar CVL-1 contig02532, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 868

Length: 1448
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34


Found at i:42 original size:19 final size:19

Alignment explanation


    Indices: 18--55  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

          8 TCAACCCCAC

                               
         18 AAAATTCTATTATTTATTT
          1 AAAATTCTATTATTTATTT

                               
         37 AAAATTCTATTATTTATTT
          1 AAAATTCTATTATTTATTT

         56 GATATGACAT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58


Consensus pattern (19 bp):   
AAAATTCTATTATTTATTT
Done.