Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002533.1 Corchorus capsularis cultivar CVL-1 contig02541, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 600

Length: 1001
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.33


Found at i:620 original size:15 final size:15

Alignment explanation


    Indices: 602--631  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        592 TTATTTCATT

                           
        602 AGAGGTAGAGGGCAA
          1 AGAGGTAGAGGGCAA

                           
        617 AGAGGTAGAGGGCAA
          1 AGAGGTAGAGGGCAA

        632 CCCTAAAACA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.40, C:0.07, G:0.47, T:0.07


Consensus pattern (15 bp):   
AGAGGTAGAGGGCAA
Done.