Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002544.1 Corchorus capsularis cultivar CVL-1 contig02552, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 663

Length: 1106
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.31


Found at i:757 original size:19 final size:19

Alignment explanation


    Indices: 733--771  Score: 78
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        723 CTTATTTATT

                               
        733 TATATTCGAATTACTTTTA
          1 TATATTCGAATTACTTTTA

                               
        752 TATATTCGAATTACTTTTA
          1 TATATTCGAATTACTTTTA

             
        771 T
          1 T

        772 CGCATTCCCA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.31, C:0.10, G:0.05, T:0.54


Consensus pattern (19 bp):   
TATATTCGAATTACTTTTA
Done.