Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002549.1 Corchorus capsularis cultivar CVL-1 contig02557, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 619

Length: 1032
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26


Found at i:23 original size:17 final size:17

Alignment explanation


    Indices: 1--33  Score: 66
    Period size: 17  Copynumber: 1.9  Consensus size: 17

                             
          1 ATATAAATTTATTTTAT
          1 ATATAAATTTATTTTAT

                            
         18 ATATAAATTTATTTTA
          1 ATATAAATTTATTTTA

         34 AAAATTTATA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58


Consensus pattern (17 bp):   
ATATAAATTTATTTTAT
Done.