Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002559.1 Corchorus capsularis cultivar CVL-1 contig02567, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 765

Length: 1276
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:534 original size:13 final size:13

Alignment explanation


    Indices: 518--544  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

        508 GAAGGGAATA

                         
        518 AAATAAAAAAAAG
          1 AAATAAAAAAAAG

                         
        531 AAATAAAAAAAAG
          1 AAATAAAAAAAAG

             
        544 A
          1 A

        545 GGGGAAAAAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.85, C:0.00, G:0.07, T:0.07


Consensus pattern (13 bp):   
AAATAAAAAAAAG
Done.