Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002563.1 Corchorus capsularis cultivar CVL-1 contig02571, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 660

Length: 1100
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29


Found at i:269 original size:23 final size:23

Alignment explanation


    Indices: 230--291  Score: 106
    Period size: 23  Copynumber: 2.6  Consensus size: 23

        220 GAGTGGCCTT

                                     
        230 TTATTTATTTATTTATATTTATTGA
          1 TTATTTA--TATTTATATTTATTGA

                                   
        255 TTATTTATATTTATATTTATTGA
          1 TTATTTATATTTATATTTATTGA

                          
        278 TTATTTATATTTAT
          1 TTATTTATATTTAT

        292 CGTATATTTA


Statistics
Matches: 37,  Mismatches: 0, Indels: 2
        0.95            0.00        0.05

Matches are distributed among these distances:
  23   30  0.81
  25    7  0.19

ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68


Consensus pattern (23 bp):   
TTATTTATATTTATATTTATTGA

Found at i:299 original size:17 final size:17

Alignment explanation


    Indices: 260--301  Score: 59
    Period size: 17  Copynumber: 2.5  Consensus size: 17

        250 ATTGATTATT

                           * 
        260 TATATTTATATTTATTG
          1 TATATTTATATTTATCG

                              
        277 -ATTATTTATATTTATCG
          1 TA-TATTTATATTTATCG

                    
        294 TATATTTA
          1 TATATTTA

        302 CTTTTAAATA


Statistics
Matches: 22,  Mismatches: 1, Indels: 4
        0.81            0.04        0.15

Matches are distributed among these distances:
  16    1  0.05
  17   20  0.91
  18    1  0.05

ACGTcount: A:0.31, C:0.02, G:0.05, T:0.62


Consensus pattern (17 bp):   
TATATTTATATTTATCG
Done.