Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002571.1 Corchorus capsularis cultivar CVL-1 contig02579, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 683

Length: 1139
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28


Found at i:39 original size:27 final size:27

Alignment explanation


    Indices: 1--55  Score: 110
    Period size: 27  Copynumber: 2.0  Consensus size: 27

                                       
          1 GGATGAGCTTCAAGAGAATGATTCGGA
          1 GGATGAGCTTCAAGAGAATGATTCGGA

                                       
         28 GGATGAGCTTCAAGAGAATGATTCGGA
          1 GGATGAGCTTCAAGAGAATGATTCGGA

             
         55 G
          1 G

         56 TTCTTGCAGA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   28  1.00

ACGTcount: A:0.33, C:0.11, G:0.35, T:0.22


Consensus pattern (27 bp):   
GGATGAGCTTCAAGAGAATGATTCGGA
Done.