Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002585.1 Corchorus capsularis cultivar CVL-1 contig02593, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 678

Length: 1131
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.28


Found at i:75 original size:10 final size:10

Alignment explanation


    Indices: 60--99  Score: 57
    Period size: 10  Copynumber: 4.1  Consensus size: 10

         50 TATGTTTAAT

                      
         60 TACTTATATA
          1 TACTTATATA

                       
         70 TACTTATACT-
          1 TACTTATA-TA

                      
         80 TACTTATATA
          1 TACTTATATA

                      
         90 TA-TTATATA
          1 TACTTATATA

             
         99 T
          1 T

        100 TCAATATAGA


Statistics
Matches: 28,  Mismatches: 0, Indels: 5
        0.85            0.00        0.15

Matches are distributed among these distances:
   9    9  0.32
  10   18  0.64
  11    1  0.04

ACGTcount: A:0.38, C:0.10, G:0.00, T:0.53


Consensus pattern (10 bp):   
TACTTATATA

Found at i:84 original size:20 final size:19

Alignment explanation


    Indices: 59--96  Score: 67
    Period size: 20  Copynumber: 1.9  Consensus size: 19

         49 TTATGTTTAA

                                
         59 TTACTTATATATACTTATAC
          1 TTACTTATATATA-TTATAC

                              
         79 TTACTTATATATATTATA
          1 TTACTTATATATATTATA

         97 TATTCAATAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  19    5  0.28
  20   13  0.72

ACGTcount: A:0.37, C:0.11, G:0.00, T:0.53


Consensus pattern (19 bp):   
TTACTTATATATATTATAC
Done.