Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002588.1 Corchorus capsularis cultivar CVL-1 contig02596, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 604

Length: 1007
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32


Found at i:339 original size:22 final size:22

Alignment explanation


    Indices: 311--358  Score: 96
    Period size: 22  Copynumber: 2.2  Consensus size: 22

        301 TTGTCTTAAT

                                  
        311 AATATTGCATATTTTATACATA
          1 AATATTGCATATTTTATACATA

                                  
        333 AATATTGCATATTTTATACATA
          1 AATATTGCATATTTTATACATA

                
        355 AATA
          1 AATA

        359 GACTAAGTCC


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   26  1.00

ACGTcount: A:0.44, C:0.08, G:0.04, T:0.44


Consensus pattern (22 bp):   
AATATTGCATATTTTATACATA
Done.