Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000259.1 Corchorus capsularis cultivar CVL-1 contig00259, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 830

Length: 1384
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28


Found at i:566 original size:33 final size:32

Alignment explanation


    Indices: 483--589  Score: 117
    Period size: 33  Copynumber: 3.2  Consensus size: 32

        473 CGCCTAGCGA

                              *   *        *  
        483 TGGCCGGT-TGTGGCCGGACATGTCCATGTCACG
          1 TGGCCGGTGT-TGGCCGGGCATCTCCA-GTCGCG

                                             
        516 TGGCCGGTGTTGGCCGGGCATCTCCGAGTCGCG
          1 TGGCCGGTGTTGGCCGGGCATCTCC-AGTCGCG

                               *            *
        549 TGGCCGGTGTTGGCCGGGCTTCTCCAAGTCGCA
          1 TGGCCGGTGTTGGCCGGGCATCTCC-AGTCGCG

             *      
        582 TAGCCGGT
          1 TGGCCGGT

        590 CACTAGTGCT


Statistics
Matches: 65,  Mismatches: 7, Indels: 4
        0.86            0.09        0.05

Matches are distributed among these distances:
  33   63  0.97
  34    2  0.03

ACGTcount: A:0.09, C:0.29, G:0.38, T:0.23


Consensus pattern (32 bp):   
TGGCCGGTGTTGGCCGGGCATCTCCAGTCGCG
Done.