Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002612.1 Corchorus capsularis cultivar CVL-1 contig02620, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 741

Length: 1236
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32


Found at i:1003 original size:18 final size:18

Alignment explanation


    Indices: 976--1012  Score: 65
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        966 TTAAACATTT

                 *            
        976 TCTTATTGATGATGATGA
          1 TCTTACTGATGATGATGA

                              
        994 TCTTACTGATGATGATGA
          1 TCTTACTGATGATGATGA

             
       1012 T
          1 T

       1013 ATCGATTTTG


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.27, C:0.08, G:0.22, T:0.43


Consensus pattern (18 bp):   
TCTTACTGATGATGATGA

Found at i:1090 original size:18 final size:18

Alignment explanation


    Indices: 1069--1131  Score: 90
    Period size: 18  Copynumber: 3.5  Consensus size: 18

       1059 TAGAATTTTA

                     *    *   
       1069 TGACGATATGGATGCTAG
          1 TGACGATATTGATGATAG

                 *            
       1087 TGACGTTATTGATGATAG
          1 TGACGATATTGATGATAG

                 *            
       1105 TGACGCTATTGATGATAG
          1 TGACGATATTGATGATAG

                     
       1123 TGACGATAT
          1 TGACGATAT

       1132 CGATCGTGAC


Statistics
Matches: 40,  Mismatches: 5, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   40  1.00

ACGTcount: A:0.29, C:0.10, G:0.29, T:0.33


Consensus pattern (18 bp):   
TGACGATATTGATGATAG
Done.