Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002644.1 Corchorus capsularis cultivar CVL-1 contig02652, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 892

Length: 1488
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29


Found at i:823 original size:5 final size:5

Alignment explanation


    Indices: 795--835  Score: 52
    Period size: 5  Copynumber: 8.6  Consensus size: 5

        785 ACAATTAGGG

                                                                
        795 TTCT- TTCTGC TTCT- TTCT- TTCTC TTCTC TTCTC TTCTC TTC
          1 TTCTC TTCT-C TTCTC TTCTC TTCTC TTCTC TTCTC TTCTC TTC

        836 AATTTTTTTT


Statistics
Matches: 34,  Mismatches: 0, Indels: 5
        0.87            0.00        0.13

Matches are distributed among these distances:
   4   12  0.35
   5   18  0.53
   6    4  0.12

ACGTcount: A:0.00, C:0.34, G:0.02, T:0.63


Consensus pattern (5 bp):   
TTCTC

Found at i:831 original size:15 final size:13

Alignment explanation


    Indices: 795--835  Score: 55
    Period size: 14  Copynumber: 2.9  Consensus size: 13

        785 ACAATTAGGG

                          
        795 TTCTTTCTGCTTCT
          1 TTCTTTCT-CTTCT

                         
        809 TTCTTTCTCTTCT
          1 TTCTTTCTCTTCT

                          
        822 CTTCTCTTCTCTTC
          1 -TTCT-TTCTCTTC

        836 AATTTTTTTT


Statistics
Matches: 25,  Mismatches: 0, Indels: 3
        0.89            0.00        0.11

Matches are distributed among these distances:
  13    5  0.20
  14   12  0.48
  15    8  0.32

ACGTcount: A:0.00, C:0.34, G:0.02, T:0.63


Consensus pattern (13 bp):   
TTCTTTCTCTTCT
Done.