Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002646.1 Corchorus capsularis cultivar CVL-1 contig02654, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2715
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34


Found at i:974 original size:15 final size:16

Alignment explanation


    Indices: 954--987  Score: 52
    Period size: 16  Copynumber: 2.2  Consensus size: 16

        944 GATTGCTTTC

                         *  
        954 TTAGTTA-ATTTACTT
          1 TTAGTTAGATTTAATT

                            
        969 TTAGTTAGATTTAATT
          1 TTAGTTAGATTTAATT

               
        985 TTA
          1 TTA

        988 ATTCTTCTTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  15    7  0.41
  16   10  0.59

ACGTcount: A:0.29, C:0.03, G:0.09, T:0.59


Consensus pattern (16 bp):   
TTAGTTAGATTTAATT

Done.