Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002652.1 Corchorus capsularis cultivar CVL-1 contig02660, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 672

Length: 1120
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.30


Found at i:518 original size:13 final size:13

Alignment explanation


    Indices: 500--525  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

        490 GTTTATCAAT

                         
        500 TATTCATGAAGAA
          1 TATTCATGAAGAA

                         
        513 TATTCATGAAGAA
          1 TATTCATGAAGAA

        526 CTTCTGAACT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.46, C:0.08, G:0.15, T:0.31


Consensus pattern (13 bp):   
TATTCATGAAGAA
Done.