Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002660.1 Corchorus capsularis cultivar CVL-1 contig02668, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2089
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30


Found at i:787 original size:30 final size:30

Alignment explanation


    Indices: 751--815  Score: 94
    Period size: 30  Copynumber: 2.2  Consensus size: 30

        741 CCATCGCTTG

                    *                   * 
        751 GGCCATCGGATGGAGCAACCGGCCACAATC
          1 GGCCATCGCATGGAGCAACCGGCCACAACC

                         *           *    
        781 GGCCATCGCATGGGGCAACCGGCCATAACC
          1 GGCCATCGCATGGAGCAACCGGCCACAACC

                 
        811 GGCCA
          1 GGCCA

        816 ATGGATCCAT


Statistics
Matches: 31,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  30   31  1.00

ACGTcount: A:0.25, C:0.35, G:0.31, T:0.09


Consensus pattern (30 bp):   
GGCCATCGCATGGAGCAACCGGCCACAACC
Done.