Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002676.1 Corchorus capsularis cultivar CVL-1 contig02684, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 647

Length: 1079
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31


Found at i:341 original size:13 final size:13

Alignment explanation


    Indices: 323--349  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

        313 ATTGTCTAAC

                         
        323 TTTGAGTCTATCA
          1 TTTGAGTCTATCA

                         
        336 TTTGAGTCTATCA
          1 TTTGAGTCTATCA

             
        349 T
          1 T

        350 GGGAAAGACT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.22, C:0.15, G:0.15, T:0.48


Consensus pattern (13 bp):   
TTTGAGTCTATCA
Done.