Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002679.1 Corchorus capsularis cultivar CVL-1 contig02687, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2088
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.30


Found at i:1155 original size:19 final size:18

Alignment explanation


    Indices: 1122--1158  Score: 56
    Period size: 19  Copynumber: 2.0  Consensus size: 18

       1112 TTGAAATAAT

                              
       1122 TCTTCAATGATCTTCAAG
          1 TCTTCAATGATCTTCAAG

                     *         
       1140 TCTTCAAATTATCTTCAAG
          1 TCTTC-AATGATCTTCAAG

       1159 AAATCTTCAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18    5  0.29
  19   12  0.71

ACGTcount: A:0.30, C:0.22, G:0.08, T:0.41


Consensus pattern (18 bp):   
TCTTCAATGATCTTCAAG
Done.