Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002694.1 Corchorus capsularis cultivar CVL-1 contig02702, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4353
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34


Found at i:1218 original size:47 final size:50

Alignment explanation


    Indices: 1146--1239  Score: 140
    Period size: 47  Copynumber: 1.9  Consensus size: 50

       1136 TAGTCTTTAC

                                             *                 
       1146 TTTACCGTGTTTGTTGTAATCTCCGCGAAATTAGCTCTGTAA-TTTGGTCT
          1 TTTACCGTGTTTG-TGTAATCTCCGCGAAATTAACTCTGTAACTTTGGTCT

                                        *                 
       1196 TTTACCGTG-TTG-GTAATCTCCGCGAAGTTAACTCTGTAACTTTG
          1 TTTACCGTGTTTGTGTAATCTCCGCGAAATTAACTCTGTAACTTTG

       1240 TCCTGCTATG


Statistics
Matches: 41,  Mismatches: 2, Indels: 4
        0.87            0.04        0.09

Matches are distributed among these distances:
  47   25  0.61
  48    4  0.10
  49    3  0.07
  50    9  0.22

ACGTcount: A:0.19, C:0.19, G:0.20, T:0.41


Consensus pattern (50 bp):   
TTTACCGTGTTTGTGTAATCTCCGCGAAATTAACTCTGTAACTTTGGTCT
Done.