Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002708.1 Corchorus capsularis cultivar CVL-1 contig02716, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 775

Length: 1292
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.33


Found at i:92 original size:19 final size:18

Alignment explanation


    Indices: 59--95  Score: 56
    Period size: 19  Copynumber: 2.0  Consensus size: 18

         49 TTGAAATAAT

                              
         59 TCTTCAATGATCTTCAAG
          1 TCTTCAATGATCTTCAAG

                     *         
         77 TCTTCAAATTATCTTCAAG
          1 TCTTC-AATGATCTTCAAG

         96 AAATCTTCAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18    5  0.29
  19   12  0.71

ACGTcount: A:0.30, C:0.22, G:0.08, T:0.41


Consensus pattern (18 bp):   
TCTTCAATGATCTTCAAG

Found at i:403 original size:14 final size:15

Alignment explanation


    Indices: 384--412  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        374 CAATAGTTAA

                           
        384 TCAAAA-ATCAATTT
          1 TCAAAAGATCAATTT

                           
        398 TCAAAAGATCAATTT
          1 TCAAAAGATCAATTT

        413 GAATTCACAC


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14    6  0.43
  15    8  0.57

ACGTcount: A:0.48, C:0.14, G:0.03, T:0.34


Consensus pattern (15 bp):   
TCAAAAGATCAATTT
Done.