Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002715.1 Corchorus capsularis cultivar CVL-1 contig02723, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 621

Length: 1036
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31


Found at i:646 original size:17 final size:18

Alignment explanation


    Indices: 624--661  Score: 60
    Period size: 17  Copynumber: 2.2  Consensus size: 18

        614 TGCAGCCTAT

                    *         
        624 TACCTCATTCTACCT-GG
          1 TACCTCATACTACCTAGG

                              
        641 TACCTCATACTACCTAGG
          1 TACCTCATACTACCTAGG

               
        659 TAC
          1 TAC

        662 TATGGGGAGG


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  17   14  0.74
  18    5  0.26

ACGTcount: A:0.24, C:0.34, G:0.11, T:0.32


Consensus pattern (18 bp):   
TACCTCATACTACCTAGG
Done.