Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002718.1 Corchorus capsularis cultivar CVL-1 contig02726, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2178
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.29


Found at i:872 original size:21 final size:21

Alignment explanation


    Indices: 848--909  Score: 58
    Period size: 21  Copynumber: 3.0  Consensus size: 21

        838 AAGGCCGAGC

                                 
        848 ATGGCCGGGCAGGCGGCACGG
          1 ATGGCCGGGCAGGCGGCACGG

                         *         
        869 ATGG-CGCGGCAGTC-GC-CTGG
          1 ATGGCCG-GGCAGGCGGCAC-GG

            *                    
        889 CTGGGCCGGGCAGGCGGCACG
          1 AT-GGCCGGGCAGGCGGCACG

        910 ACATCGGCTG


Statistics
Matches: 32,  Mismatches: 3, Indels: 11
        0.70            0.07        0.24

Matches are distributed among these distances:
  19    1  0.03
  20    7  0.22
  21   18  0.56
  22    5  0.16
  23    1  0.03

ACGTcount: A:0.11, C:0.31, G:0.50, T:0.08


Consensus pattern (21 bp):   
ATGGCCGGGCAGGCGGCACGG
Done.