Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002728.1 Corchorus capsularis cultivar CVL-1 contig02736, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1759
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34


Found at i:969 original size:13 final size:13

Alignment explanation


    Indices: 951--976  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

        941 CCTGATTAAC

                         
        951 ATTAAAAGGCAAA
          1 ATTAAAAGGCAAA

                         
        964 ATTAAAAGGCAAA
          1 ATTAAAAGGCAAA

        977 CCTATTTATC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.62, C:0.08, G:0.15, T:0.15


Consensus pattern (13 bp):   
ATTAAAAGGCAAA
Done.