Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002748.1 Corchorus capsularis cultivar CVL-1 contig02756, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 766

Length: 1277
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.36


Found at i:758 original size:27 final size:27

Alignment explanation


    Indices: 728--809  Score: 146
    Period size: 27  Copynumber: 3.0  Consensus size: 27

        718 ATTAGGGTCG

                    *                  
        728 CCCAAGGGTATTTTGGTCATTTTTGCA
          1 CCCAAGGGCATTTTGGTCATTTTTGCA

                                       
        755 CCCAAGGGCATTTTGGTCATTTTTGCA
          1 CCCAAGGGCATTTTGGTCATTTTTGCA

                *                      
        782 CCCAGGGGCATTTTGGTCATTTTTGCA
          1 CCCAAGGGCATTTTGGTCATTTTTGCA

             
        809 C
          1 C

        810 TTAGGGGGGC


Statistics
Matches: 53,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  27   53  1.00

ACGTcount: A:0.17, C:0.22, G:0.23, T:0.38


Consensus pattern (27 bp):   
CCCAAGGGCATTTTGGTCATTTTTGCA

Done.