Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000275.1 Corchorus capsularis cultivar CVL-1 contig00275, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2011
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.34


Found at i:467 original size:21 final size:22

Alignment explanation


    Indices: 433--474  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 22

        423 ACTAAATTTT

                           *      
        433 TTTTTAAAAAAGCTTCATAATG
          1 TTTTTAAAAAAGCTTAATAATG

                     *           
        455 TTTTT-AAATAGCTTAATAAT
          1 TTTTTAAAAAAGCTTAATAAT

        475 AGGCCTCTAT


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  21   13  0.72
  22    5  0.28

ACGTcount: A:0.40, C:0.07, G:0.07, T:0.45


Consensus pattern (22 bp):   
TTTTTAAAAAAGCTTAATAATG

Found at i:1217 original size:21 final size:21

Alignment explanation


    Indices: 1191--1232  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1181 TTTCGGTTTT

                                 
       1191 AGTTGGAGATATTCATGTTCA
          1 AGTTGGAGATATTCATGTTCA

                                 
       1212 AGTTGGAGATATTCATGTTCA
          1 AGTTGGAGATATTCATGTTCA

       1233 GGTGACGATG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.29, C:0.10, G:0.24, T:0.38


Consensus pattern (21 bp):   
AGTTGGAGATATTCATGTTCA
Done.