Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002757.1 Corchorus capsularis cultivar CVL-1 contig02765, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 634

Length: 1058
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.39


Found at i:744 original size:36 final size:37

Alignment explanation


    Indices: 680--758  Score: 97
    Period size: 36  Copynumber: 2.2  Consensus size: 37

        670 AGGGTTTTCT

                                                 
        680 TTAATTGTTTTCTCAAATCTATTCACTGCTTT-TTAA
          1 TTAATTGTTTTCTCAAATCTATTCACTGCTTTCTTAA

                         **   * *  *            *
        716 TTAATTGTTTTCTTTAATTTTTTGACTGCTTTCTTAG
          1 TTAATTGTTTTCTCAAATCTATTCACTGCTTTCTTAA

                  
        753 TTAATT
          1 TTAATT

        759 TTACTTGTTT


Statistics
Matches: 36,  Mismatches: 6, Indels: 1
        0.84            0.14        0.02

Matches are distributed among these distances:
  36   27  0.75
  37    9  0.25

ACGTcount: A:0.22, C:0.13, G:0.08, T:0.58


Consensus pattern (37 bp):   
TTAATTGTTTTCTCAAATCTATTCACTGCTTTCTTAA
Done.