Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002759.1 Corchorus capsularis cultivar CVL-1 contig02767, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 613

Length: 1023
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30


Found at i:376 original size:162 final size:162

Alignment explanation


    Indices: 109--436  Score: 656
    Period size: 162  Copynumber: 2.0  Consensus size: 162

         99 CCATTTTTCC

                                                                             
        109 TTAAGTGAATTATAATTCACTTGGAACTGGCCAAAATCTAGAGGAAGTGAGTTGATAATGAACTG
          1 TTAAGTGAATTATAATTCACTTGGAACTGGCCAAAATCTAGAGGAAGTGAGTTGATAATGAACTG

                                                                             
        174 GACAAGGAAGGACTCACTTACCTCCATTCCCAATGCTTTCAGCTTTGCAGCAAGATTTGCCATTT
         66 GACAAGGAAGGACTCACTTACCTCCATTCCCAATGCTTTCAGCTTTGCAGCAAGATTTGCCATTT

                                            
        239 CAGTCACATGATCATGAATGGGCTGAGACCAG
        131 CAGTCACATGATCATGAATGGGCTGAGACCAG

                                                                             
        271 TTAAGTGAATTATAATTCACTTGGAACTGGCCAAAATCTAGAGGAAGTGAGTTGATAATGAACTG
          1 TTAAGTGAATTATAATTCACTTGGAACTGGCCAAAATCTAGAGGAAGTGAGTTGATAATGAACTG

                                                                             
        336 GACAAGGAAGGACTCACTTACCTCCATTCCCAATGCTTTCAGCTTTGCAGCAAGATTTGCCATTT
         66 GACAAGGAAGGACTCACTTACCTCCATTCCCAATGCTTTCAGCTTTGCAGCAAGATTTGCCATTT

                                            
        401 CAGTCACATGATCATGAATGGGCTGAGACCAG
        131 CAGTCACATGATCATGAATGGGCTGAGACCAG

                
        433 TTAA
          1 TTAA

        437 ATTTCTTGGT


Statistics
Matches: 166,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 162  166  1.00

ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27


Consensus pattern (162 bp):   
TTAAGTGAATTATAATTCACTTGGAACTGGCCAAAATCTAGAGGAAGTGAGTTGATAATGAACTG
GACAAGGAAGGACTCACTTACCTCCATTCCCAATGCTTTCAGCTTTGCAGCAAGATTTGCCATTT
CAGTCACATGATCATGAATGGGCTGAGACCAG
Done.