Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002769.1 Corchorus capsularis cultivar CVL-1 contig02777, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2641
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:1935 original size:55 final size:55

Alignment explanation


    Indices: 1851--1963  Score: 208
    Period size: 55  Copynumber: 2.1  Consensus size: 55

       1841 ACTTATGCTT

                                                            *      
       1851 GCAATTCTCCATGGCTCTTGCTGCCTTTCCTTTCTCCATATTTTCAAGGCAAATC
          1 GCAATTCTCCATGGCTCTTGCTGCCTTTCCTTTCTCCATATTTTCAAGCCAAATC

                                *                                  
       1906 GCAATTCTCCATGGCTCTTGTTGCCTTTCCTTTCTCCATATTTTCAAGCCAAATC
          1 GCAATTCTCCATGGCTCTTGCTGCCTTTCCTTTCTCCATATTTTCAAGCCAAATC

               
       1961 GCA
          1 GCA

       1964 CAAACTTGAC


Statistics
Matches: 56,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  55   56  1.00

ACGTcount: A:0.19, C:0.31, G:0.12, T:0.38


Consensus pattern (55 bp):   
GCAATTCTCCATGGCTCTTGCTGCCTTTCCTTTCTCCATATTTTCAAGCCAAATC
Done.