Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002772.1 Corchorus capsularis cultivar CVL-1 contig02780, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1745
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31


Found at i:238 original size:44 final size:45

Alignment explanation


    Indices: 173--261  Score: 153
    Period size: 44  Copynumber: 2.0  Consensus size: 45

        163 GATTACTTCT

                                                         
        173 CCAGCTCATCATTAATCCGGGGTAGGG-TCTTTTAGTAATTCCAC
          1 CCAGCTCATCATTAATCCGGGGTAGGGATCTTTTAGTAATTCCAC

                          * *                            
        217 CCAGCTCATCATTAGTTCGGGGTAGGGATCTTTTAGTAATTCCAC
          1 CCAGCTCATCATTAATCCGGGGTAGGGATCTTTTAGTAATTCCAC

        262 TACTCTATTA


Statistics
Matches: 42,  Mismatches: 2, Indels: 1
        0.93            0.04        0.02

Matches are distributed among these distances:
  44   25  0.60
  45   17  0.40

ACGTcount: A:0.22, C:0.24, G:0.21, T:0.33


Consensus pattern (45 bp):   
CCAGCTCATCATTAATCCGGGGTAGGGATCTTTTAGTAATTCCAC
Done.