Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002782.1 Corchorus capsularis cultivar CVL-1 contig02790, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 762

Length: 1270
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1151 original size:22 final size:20

Alignment explanation


    Indices: 1126--1174  Score: 64
    Period size: 20  Copynumber: 2.4  Consensus size: 20

       1116 AAGTTCGTGT

                                  
       1126 TTTGAAGATTTCTTGAAGATAA
          1 TTTGAAGA-TT-TTGAAGATAA

                              * 
       1148 TTTGAAGATTTTGAAGATCA
          1 TTTGAAGATTTTGAAGATAA

                    
       1168 -TTGAAGA
          1 TTTGAAGA

       1175 ATTATTTCAA


Statistics
Matches: 26,  Mismatches: 1, Indels: 3
        0.87            0.03        0.10

Matches are distributed among these distances:
  19    7  0.27
  20    9  0.35
  21    2  0.08
  22    8  0.31

ACGTcount: A:0.37, C:0.04, G:0.20, T:0.39


Consensus pattern (20 bp):   
TTTGAAGATTTTGAAGATAA
Done.