Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002804.1 Corchorus capsularis cultivar CVL-1 contig02812, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 969

Length: 1615
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40


Found at i:144 original size:15 final size:14

Alignment explanation


    Indices: 113--154  Score: 57
    Period size: 14  Copynumber: 2.9  Consensus size: 14

        103 ACATATATTC

                      *   
        113 AATGTTATAACATA
          1 AATGTTATAAAATA

                           
        127 AATGTTATAATAATA
          1 AATGTTATAA-AATA

                  *      
        142 AATGTTCTAAAAT
          1 AATGTTATAAAAT

        155 TGTAACCTCT


Statistics
Matches: 25,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  14   13  0.52
  15   12  0.48

ACGTcount: A:0.50, C:0.05, G:0.07, T:0.38


Consensus pattern (14 bp):   
AATGTTATAAAATA
Done.