Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002807.1 Corchorus capsularis cultivar CVL-1 contig02815, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 637

Length: 1063
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.33


Found at i:386 original size:109 final size:110

Alignment explanation


    Indices: 188--399  Score: 356
    Period size: 109  Copynumber: 1.9  Consensus size: 110

        178 AAAGAGGAAT

                                       *                                     
        188 TTAATAAACTACTCCGCTGTTTTTGGGGAGTGGAGCACACGGGGTTCGGTATCACAAATATCAAC
          1 TTAATAAACTACTCCGCTGTTTTTGGGAAGTGGAGCACACGGGGTTCGGTATCACAAATATCAAC

                                        *                
        253 CTTCGCGTCAGTCACGAACCAAAATTA-TGAGTATGCAGAGCATC
         66 CTTCGCGTCAGTCACGAACCAAAATTACAGAGTATGCAGAGCATC

                    *                          *                             
        297 TTAATAAATTACTCCGCTGTTTTTGGGAAGTGGAGTACACGGGGTTCGGTATCACAAATATCAAC
          1 TTAATAAACTACTCCGCTGTTTTTGGGAAGTGGAGCACACGGGGTTCGGTATCACAAATATCAAC

                          *                        
        362 CTTCGCGTCAGTCATG-ACCTAAAATTACAGAGTATGCA
         66 CTTCGCGTCAGTCACGAACC-AAAATTACAGAGTATGCA

        400 AGGCACCTTA


Statistics
Matches: 96,  Mismatches: 5, Indels: 3
        0.92            0.05        0.03

Matches are distributed among these distances:
 108    3  0.03
 109   84  0.88
 110    9  0.09

ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27


Consensus pattern (110 bp):   
TTAATAAACTACTCCGCTGTTTTTGGGAAGTGGAGCACACGGGGTTCGGTATCACAAATATCAAC
CTTCGCGTCAGTCACGAACCAAAATTACAGAGTATGCAGAGCATC
Done.