Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002815.1 Corchorus capsularis cultivar CVL-1 contig02823, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1786
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35


Found at i:923 original size:8 final size:8

Alignment explanation


    Indices: 910--943  Score: 50
    Period size: 8  Copynumber: 4.1  Consensus size: 8

        900 ACCCTTCTTG

                    
        910 AAAAATTC
          1 AAAAATTC

                    
        918 AAAAATTC
          1 AAAAATTC

                 *   
        926 AGAAACTTC
          1 A-AAAATTC

                    
        935 AAAAATTC
          1 AAAAATTC

             
        943 A
          1 A

        944 TAGCAGTTTC


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
   8   16  0.70
   9    7  0.30

ACGTcount: A:0.59, C:0.15, G:0.03, T:0.24


Consensus pattern (8 bp):   
AAAAATTC

Found at i:1037 original size:5 final size:5

Alignment explanation


    Indices: 1017--1049  Score: 50
    Period size: 5  Copynumber: 6.6  Consensus size: 5

       1007 GTTATATCGA

                                                    
       1017 AAAAT ATAAA- AAAAT AAAAT AAAAT AAAAT AAA
          1 AAAAT A-AAAT AAAAT AAAAT AAAAT AAAAT AAA

       1050 TTTTCGACCA


Statistics
Matches: 26,  Mismatches: 0, Indels: 4
        0.87            0.00        0.13

Matches are distributed among these distances:
   4    3  0.12
   5   20  0.77
   6    3  0.12

ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18


Consensus pattern (5 bp):   
AAAAT

Done.