Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002835.1 Corchorus capsularis cultivar CVL-1 contig02843, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1821
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27


Found at i:1338 original size:12 final size:14

Alignment explanation


    Indices: 1309--1341  Score: 52
    Period size: 12  Copynumber: 2.5  Consensus size: 14

       1299 GTGGCAGAGG

                          
       1309 GAAGAAGCGTTGAA
          1 GAAGAAGCGTTGAA

                          
       1323 GAAGAAG-GTT-AA
          1 GAAGAAGCGTTGAA

                   
       1335 GAAGAAG
          1 GAAGAAG

       1342 AGTACGGGTC


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  12    9  0.47
  13    3  0.16
  14    7  0.37

ACGTcount: A:0.48, C:0.03, G:0.36, T:0.12


Consensus pattern (14 bp):   
GAAGAAGCGTTGAA
Done.