Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002837.1 Corchorus capsularis cultivar CVL-1 contig02845, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 796

Length: 1327
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.36


Found at i:507 original size:15 final size:15

Alignment explanation


    Indices: 487--517  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        477 TATTGCTGGG

                           
        487 TGAGTTGTTGTACTT
          1 TGAGTTGTTGTACTT

                           
        502 TGAGTTGTTGTACTT
          1 TGAGTTGTTGTACTT

             
        517 T
          1 T

        518 AGCATCCCAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.13, C:0.06, G:0.26, T:0.55


Consensus pattern (15 bp):   
TGAGTTGTTGTACTT
Done.