Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000284.1 Corchorus capsularis cultivar CVL-1 contig00284, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 880

Length: 1467
ACGTcount: A:0.43, C:0.11, G:0.16, T:0.30


Found at i:1022 original size:19 final size:18

Alignment explanation


    Indices: 998--1060  Score: 72
    Period size: 19  Copynumber: 3.2  Consensus size: 18

        988 ATAGGAAAAT

                               
        998 ATGATCAATGTTTGGTGTA
          1 ATGATCAAT-TTTGGTGTA

                   *           
       1017 ATGATCATTATTTGGTGTA
          1 ATGATCAAT-TTTGGTGTA

                                 
       1036 ATGGTATCAATTTTGAGTGTA
          1 AT-G-ATCAATTTTG-GTGTA

                
       1057 ATGA
          1 ATGA

       1061 AAAATCACTC


Statistics
Matches: 38,  Mismatches: 3, Indels: 6
        0.81            0.06        0.13

Matches are distributed among these distances:
  19   20  0.53
  20    6  0.16
  21   12  0.32

ACGTcount: A:0.29, C:0.05, G:0.24, T:0.43


Consensus pattern (18 bp):   
ATGATCAATTTTGGTGTA

Done.