Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002847.1 Corchorus capsularis cultivar CVL-1 contig02855, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 866

Length: 1444
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29


Found at i:665 original size:109 final size:110

Alignment explanation


    Indices: 512--807  Score: 461
    Period size: 109  Copynumber: 2.7  Consensus size: 110

        502 TAAATTAAAA

                          **          *                                      
        512 TGGTAAAAATAAAAAAAATTATATAAAATATT-GAATTTAATTAAATGAAAATAGAGTTTTTAGT
          1 TGGTAAAAAT-AAAGTAATTATA-AAGATATTAGAATTTAATTAAATGAAAATAGAGTTTTTAGT

                                                     *     
        576 AGAATAAAATTGTATATTAGAAAAAATTTTAATATATCCAATTTTTT
         64 AGAATAAAATTGTATATTAGAAAAAATTTTAATATATCCAAATTTTT

                                                                             
        623 TGGTAAAAATAAAGTAATTATAAAGATATTAG-ATTTAATTAAATGAAAATAGAGTTTTTAGTAG
          1 TGGTAAAAATAAAGTAATTATAAAGATATTAGAATTTAATTAAATGAAAATAGAGTTTTTAGTAG

                                         *               
        687 AATAAAATTGTATATTAGAAAAAATTTTAGTATATCCAAATTTTT
         66 AATAAAATTGTATATTAGAAAAAATTTTAATATATCCAAATTTTT

                                                             *            *  
        732 TGGTAAAAATAAAGTAATTATAAAGATATTAGATTTAATTTAATTAAATAAAAATAGAGTTTCTA
          1 TGGTAAAAATAAAGTAATTATAAAGATATTAG----AATTTAATTAAATGAAAATAGAGTTTTTA

                       
        797 GTAGAATAAAA
         62 GTAGAATAAAA

        808 CTATAATAGT


Statistics
Matches: 172,  Mismatches: 7, Indels: 9
        0.91            0.04        0.05

Matches are distributed among these distances:
 109  114  0.66
 110   11  0.06
 111   10  0.06
 114   37  0.22

ACGTcount: A:0.50, C:0.02, G:0.11, T:0.38


Consensus pattern (110 bp):   
TGGTAAAAATAAAGTAATTATAAAGATATTAGAATTTAATTAAATGAAAATAGAGTTTTTAGTAG
AATAAAATTGTATATTAGAAAAAATTTTAATATATCCAAATTTTT
Done.