Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002849.1 Corchorus capsularis cultivar CVL-1 contig02857, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3655
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.31


Found at i:811 original size:28 final size:28

Alignment explanation


    Indices: 771--826  Score: 94
    Period size: 28  Copynumber: 2.0  Consensus size: 28

        761 AAACTAGTTT

                                 *      
        771 TTTTGCCCGCGCTTCGTTGCGGGGTCGA
          1 TTTTGCCCGCGCTTCGTTGCGCGGTCGA

                               *        
        799 TTTTGCCCGCGCTTCGTTGTGCGGTCGA
          1 TTTTGCCCGCGCTTCGTTGCGCGGTCGA

        827 AAATTTTGTT


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  28   26  1.00

ACGTcount: A:0.04, C:0.29, G:0.34, T:0.34


Consensus pattern (28 bp):   
TTTTGCCCGCGCTTCGTTGCGCGGTCGA

Found at i:3504 original size:28 final size:28

Alignment explanation


    Indices: 3464--3527  Score: 101
    Period size: 28  Copynumber: 2.3  Consensus size: 28

       3454 CCAGGACGTC

                            *           
       3464 TCCTTCTGGTATATCAGGCGAAAAATCT
          1 TCCTTCTGGTATATCAAGCGAAAAATCT

                                *       
       3492 TCCTTCTGGTATATCAAGCGGAAAATCT
          1 TCCTTCTGGTATATCAAGCGAAAAATCT

               *    
       3520 TCCCTCTG
          1 TCCTTCTG

       3528 ATATGTCACA


Statistics
Matches: 33,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  28   33  1.00

ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33


Consensus pattern (28 bp):   
TCCTTCTGGTATATCAAGCGAAAAATCT
Done.